Drammy - I actually had the same problem with Cubase, but the problem was not the MD, it was Cubase. The midi clock in Cubase is BAD, at least in my computer (its a good computer and decent soundcard - audiophile). Sometimes, when hearing stuff sequenced in my Cubase, I can feel things going slightly out of tempo, or the song itself, like if someone just pushed the record a little.
I had the same problem trying to sync the virus arp with Cubase: after a while the virus was completely out of time. With all that, the fact that you cant have cubase as a slave (dont know why) doesnt help at all.
You could always record your MD loops in Cubase and sequence them as audio, or find another soft sequencer (try before buy). Other than that, my only solution, after lots of frustration, was start using hardware sequencers, which can have the same problems, but luckily so far so good. The MD still has some bugs, but the midi clock is rock solid.
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