If you want to make trouble free automation, do not arm your midi tracks and press record and tweak away. You will end up with vst automation.
If your recording CC midi make sure you midi track is only seeing the input you want, not other gear or VSTi.
Is that what you mean.
Also a common problem is with soft knobs and saving and opening a project.
If you use soft knobs, make sure you record their position in real midi CC or else the sound will go back to 0,0,0 on the soft knobs at load time.
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