Sorry I didn't fully address your question about bouncing and moving on. I do tend to do that -- bounce to a clip (but at that point I might move the clip elsewhere, so the tracks I use to create on aren't necessarily the tracks used for final mixing).
But, I leave the patch config for each part so I can go back and edit it if need be. I wouldn't just bounce then discard the edits I've made to patch and MIDI because I will most likely want to change something later.
If I were using a desktop I'd probably just do the same workflow, except with 3 times the stereo tracks depending on how much polyphony I could get out of it.
By the way how is the latency issue in Cubase vs FL?
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